STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0048320CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (595 aa)    
Predicted Functional Partners:
BN2166_0042040
BY PROTMAP: gi|647395953|emb|CDR37887.1| RHTO0S03e00672g1_1 [Rhodosporidium toruloides].
  
 0.967
BN2166_0058000
BY PROTMAP: gi|647399425|emb|CDR44186.1| RHTO0S09e00980g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.934
BN2166_0058450
BY PROTMAP: gi|647398497|emb|CDR42508.1| RHTO0S07e00188g1_1 [Rhodosporidium toruloides]; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.934
BN2166_0018950
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 0.933
BN2166_0010960
25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family.
  
  
 0.933
BN2166_0011940
annotation not available
  
 0.924
BN2166_0039740
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.921
BN2166_0005080
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.918
BN2166_0031140
BY PROTMAP: gi|342319576|gb|EGU11523.1| 60S ribosomal protein L3 [Rhodotorula glutinis ATCC 204091]; Belongs to the universal ribosomal protein uL3 family.
   
 0.905
BN2166_0023130
RHTO0S18e01002g1_1.
   
 
 0.898
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.