STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0066790BY PROTMAP: gi|342318972|gb|EGU10924.1| 54S ribosomal protein L4 [Rhodotorula glutinis ATCC 204091]. (291 aa)    
Predicted Functional Partners:
BN2166_0026780
FGENESH: predicted gene_5.223 protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.995
BN2166_0012370
FGENESH: predicted gene_2.406 protein.
   
 
 0.991
BN2166_0034080
Putative 50s ribosomal protein l19.
   
 
 0.987
BN2166_0055830
FGENESH: predicted gene_11.79 protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.987
BN2166_0067510
BY PROTMAP: gi|342321093|gb|EGU13030.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
   0.986
BN2166_0013440
Ribosomal protein L4 domain-containing protein.
   
 
 0.985
BN2166_0024150
Belongs to the Nudix hydrolase family.
   
 
 0.985
BN2166_0073190
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.985
BN2166_0020970
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.984
BN2166_0011850
Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.984
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.