STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0063360Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity. (280 aa)    
Predicted Functional Partners:
BN2166_0041490
Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.982
BN2166_0048390
FGENESH: predicted gene_9.185 protein.
    
 0.980
BN2166_0064870
BY PROTMAP: gi|814540119|emb|CEQ42520.1| SPOSA6832_04345, partial [Sporidiobolus salmonicolor]; Belongs to the cullin family.
   
 0.974
BN2166_0041910
BY PROTMAP: gi|814541231|emb|CEQ41447.1| SPOSA6832_03156, partial [Sporidiobolus salmonicolor]; Belongs to the cullin family.
   
 0.969
BN2166_0067830
FGENESH: predicted gene_15.64 protein.
    
 0.919
BN2166_0061520
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
 
      0.855
BN2166_0032610
Belongs to the cullin family.
    
 0.848
BN2166_0053250
annotation not available
    
 0.847
BN2166_0005130
BY PROTMAP: gi|342320740|gb|EGU12679.1| NEDD8 activating enzyme [Rhodotorula glutinis ATCC 204091].
    
 0.837
BN2166_0030860
Armadillo-type fold.
    
 0.796
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.