STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0066080BY PROTMAP: gi|342318992|gb|EGU10944.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (312 aa)    
Predicted Functional Partners:
BN2166_0055390
Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.
    
 0.585
BN2166_0068260
FGENESH: predicted gene_15.107 protein.
    
 0.489
BN2166_0015330
annotation not available
     
 0.447
BN2166_0035390
BY PROTMAP: gi|342319749|gb|EGU11696.1| Nitrate reductase [Rhodotorula glutinis ATCC 204091].
     
 0.447
BN2166_0046550
RHTO0S21e02696g1_1.
    
  0.433
BN2166_0030610
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.433
BN2166_0050150
FGENESH: predicted gene_9.361 protein.
    
  0.433
BN2166_0033120
BY PROTMAP: gi|647399978|emb|CDR45008.1| RHTO0S10e04126g1_1 [Rhodosporidium toruloides].
    
  0.433
BN2166_0045780
annotation not available
    
  0.417
BN2166_0002550
HRDC-like protein.
    
  0.406
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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