STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0053420Putative phosphoglycerate mutase family protein. (243 aa)    
Predicted Functional Partners:
BN2166_0007990
Tryptophan synthase.
  
 0.964
BN2166_0049150
annotation not available
  
 0.954
BN2166_0056010
Small subunit of acetolactate synthase-domain containing protein.
  
 
 0.877
BN2166_0055500
annotation not available
  
 
 0.857
BN2166_0002470
annotation not available
  
 
 0.823
BN2166_0034030
FGENESH: predicted gene_6.325 protein.
  
 
 0.807
BN2166_0041430
Acetolactate synthase.
  
 0.805
BN2166_0004000
FGENESH: predicted gene_1.400 protein.
  
 0.783
BN2166_0042070
Homocysteine S-methyltransferase.
  
 0.780
BN2166_0054840
Glycine hydroxymethyltransferase.
     
 0.741
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.