STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0054420BY PROTMAP: gi|647394313|emb|CDR35542.1| RHTO0S01e01640g1_1 [Rhodosporidium toruloides]. (404 aa)    
Predicted Functional Partners:
BN2166_0049680
annotation not available
   
 0.944
BN2166_0043610
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.911
BN2166_0039750
Histone acetyltransferases subunit 3-domain containing protein.
    
 0.899
BN2166_0053430
annotation not available
   
 0.896
BN2166_0045560
Enhancer of polycomb-like protein.
    
 0.885
BN2166_0056380
BY PROTMAP: gi|647399608|emb|CDR44506.1| RHTO0S09e05138g1_1 [Rhodosporidium toruloides]; Belongs to the PI3/PI4-kinase family.
    
 0.876
BN2166_0065950
BY PROTMAP: gi|342319001|gb|EGU10953.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 0.872
BN2166_0000260
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.868
BN2166_0045780
annotation not available
   
 0.856
BN2166_0052620
Histone acetyltransferase subunit NuA4-domain containing protein.
    
 0.855
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.