STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0054720VHS domain-domain containing protein. (539 aa)    
Predicted Functional Partners:
BN2166_0042970
Mannose-6-phosphate receptor binding domain-containing protein.
    
 
 0.927
BN2166_0022080
BY PROTMAP: gi|814541299|emb|CEQ41283.1| SPOSA6832_02986, partial [Sporidiobolus salmonicolor]; Belongs to the small GTPase superfamily. Arf family.
    
 0.923
BN2166_0003390
annotation not available
    
   0.874
BN2166_0057070
ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
    
 0.787
BN2166_0056950
annotation not available
    
 
 0.764
BN2166_0018570
Uncharacterized protein.
   
   0.741
BN2166_0029020
Ubiquitin-related domain-containing protein.
   
   0.741
BN2166_0042310
FGENESH: predicted gene_8.86 protein.
   
   0.741
BN2166_0039100
FGENESH: predicted gene_7.295 protein.
     
 0.685
BN2166_0012410
Beta-hexosaminidase.
     
 0.679
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.