STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0067460Uncharacterized protein. (295 aa)    
Predicted Functional Partners:
BN2166_0064150
annotation not available
   
 0.761
BN2166_0045880
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.742
BN2166_0065650
BY PROTMAP: gi|342319016|gb|EGU10968.1| Actin cross-linking [Rhodotorula glutinis ATCC 204091].
   
 0.689
BN2166_0061410
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.655
BN2166_0054850
annotation not available
   
  0.648
BN2166_0073100
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.639
BN2166_0065110
BY PROTMAP: gi|342319042|gb|EGU10994.1| amino acid transporter [Rhodotorula glutinis ATCC 204091].
    
  0.613
BN2166_0001210
annotation not available
   
  0.603
BN2166_0000120
annotation not available
    
 0.571
BN2166_0053860
RHTO0S01e03026g1_1; Belongs to the calmodulin family.
    
 0.570
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.