STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0074140FGENESH: predicted gene_18.65 protein. (406 aa)    
Predicted Functional Partners:
BN2166_0001460
annotation not available
   
 
 0.820
BN2166_0020660
BY PROTMAP: gi|647398251|emb|CDR41975.1| RHTO0S06e08416g2_1 [Rhodosporidium toruloides]; Belongs to the OSBP family.
   
 0.692
BN2166_0041530
FGENESH: predicted gene_8.8 protein.
   
  0.550
BN2166_0005330
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.501
BN2166_0039080
BY PROTMAP: gi|342320467|gb|EGU12407.1| UDP-xylose synthase [Rhodotorula glutinis ATCC 204091].
     
 0.475
BN2166_0050850
Sterol-sensing domain of SREBP cleavage-activation-domain containing protein.
   
 0.447
BN2166_0039870
BY PROTMAP: gi|342320434|gb|EGU12374.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
 0.447
BN2166_0052160
BY PROTMAP: gi|647394553|emb|CDR35784.1| RHTO0S01e07030g1_1 [Rhodosporidium toruloides].
    
 0.439
BN2166_0031930
GTP-binding protein, SEC4.
    
  0.421
BN2166_0037050
Uncharacterized protein.
    
  0.421
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.