STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0071630DEAD-box protein abstrakt. (637 aa)    
Predicted Functional Partners:
BN2166_0066000
annotation not available
   
 0.820
BN2166_0032240
BY PROTMAP: gi|342319625|gb|EGU11572.1| Importin [Rhodotorula glutinis ATCC 204091].
    
  0.791
BN2166_0061970
BY PROTMAP: gi|342319447|gb|EGU11395.1| DEAH box polypeptide 36 [Rhodotorula glutinis ATCC 204091].
    
 0.740
BN2166_0053790
BY PROTMAP: gi|342319187|gb|EGU11137.1| Pre-mRNA splicing factor [Rhodotorula glutinis ATCC 204091].
    
  0.737
BN2166_0040100
BY PROTMAP: gi|647401570|emb|CDR47905.1| RHTO0S15e03466g1_1 [Rhodosporidium toruloides].
   
 0.721
BN2166_0054260
ATP-dependent RNA helicase DHX8.
   
 0.721
BN2166_0064510
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.721
BN2166_0042740
BY PROTMAP: gi|342321602|gb|EGU13535.1| Pre-mRNA splicing factor [Rhodotorula glutinis ATCC 204091].
   
 0.702
BN2166_0038210
BY PROTMAP: gi|647398784|emb|CDR43018.1| RHTO0S07e06656g1_1 [Rhodosporidium toruloides].
    
  0.694
BN2166_0035080
Uncharacterized protein.
  
 
 
0.692
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.