STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0070510BY PROTMAP: gi|647400470|emb|CDR45963.1| RHTO0S11e06722g2_1 [Rhodosporidium toruloides]. (297 aa)    
Predicted Functional Partners:
BN2166_0015330
annotation not available
   
 0.792
BN2166_0035390
BY PROTMAP: gi|342319749|gb|EGU11696.1| Nitrate reductase [Rhodotorula glutinis ATCC 204091].
   
 0.792
BN2166_0058890
BY PROTMAP: gi|472587497|gb|EMS24993.1| cytochrome b5 reductase 4 [Rhodosporidium toruloides NP11]; Belongs to the cytochrome b5 family.
    
  0.792
BN2166_0019480
NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
    
  0.691
BN2166_0029040
Aminoimidazole ribonucleotide synthetase.
    
  0.593
BN2166_0049740
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
  0.581
BN2166_0060050
NAD dehydrogenase.
    
  0.552
BN2166_0012410
Beta-hexosaminidase.
     
 0.509
BN2166_0007860
annotation not available
      
 0.474
BN2166_0062080
annotation not available
      
 0.474
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.