STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0068920Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (538 aa)    
Predicted Functional Partners:
BN2166_0059430
annotation not available
    
 0.748
BN2166_0067780
FGENESH: predicted gene_15.59 protein.
    
 0.711
BN2166_0067660
annotation not available
    
 0.711
BN2166_0043150
annotation not available
    
 0.698
BN2166_0065260
Putative ras-related protein RSR1.
    
 0.698
BN2166_0072940
BY PROTMAP: gi|472584455|gb|EMS22049.1| Ras GTPase [Rhodosporidium toruloides NP11].
    
 0.698
BN2166_0045720
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.680
BN2166_0020990
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 0.648
BN2166_0061330
BY PROTMAP: gi|342321137|gb|EGU13072.1| Ras-2 [Rhodotorula glutinis ATCC 204091].
    
 0.637
BN2166_0040180
BY PROTMAP: gi|647401561|emb|CDR47884.1| RHTO0S15e03246g1_1 [Rhodosporidium toruloides].
    
 0.619
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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