STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0068970FGENESH: predicted gene_15.178 protein. (996 aa)    
Predicted Functional Partners:
BN2166_0038620
Cyclin-dependent protein kinase inhibitor.
   
 0.797
BN2166_0023010
annotation not available
    
 0.675
BN2166_0038930
BY PROTMAP: gi|814542916|emb|CEQ39947.1| SPOSA6832_01515, partial [Sporidiobolus salmonicolor]; Belongs to the adaptor complexes medium subunit family.
    
 0.647
BN2166_0007960
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.601
BN2166_0001360
DUF1681 domain-containing protein.
     
 0.564
BN2166_0011610
Putative phospholipase.
     
 0.561
BN2166_0008060
BY PROTMAP: gi|647395027|emb|CDR36263.1| RHTO0S01e17810g1_1 [Rhodosporidium toruloides].
    
 0.560
BN2166_0062840
MHD domain-containing protein.
    
 0.560
BN2166_0000900
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 0.555
BN2166_0013190
annotation not available
    
 0.555
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.