STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5FKF8Sorting nexin-41. (816 aa)    
Predicted Functional Partners:
A0A5C5G3W2
Lipid binding protein.
    
0.980
A0A5C5G6X7
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.761
A0A5C5FWJ7
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.740
A0A5C5FUQ5
Cytoskeleton assembly control protein.
   
 0.705
A0A5C5G005
Synaptobrevin.
    
 0.692
A0A5C5FQM5
Mannose-6-phosphate receptor binding domain-containing protein.
    
 0.678
A0A5C5FX04
Serine/threonine-protein kinase ATG1.
   
 
 0.667
A0A5C5G3H4
PX domain-containing protein.
   
 0.659
A0A5C5G0R4
Vps5 C terminal like-domain-containing protein.
   
 
 0.637
A0A5C5FNF4
Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.
    
 0.630
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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