STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5FSJ1Uncharacterized protein. (1216 aa)    
Predicted Functional Partners:
A0A5C5G8J2
MHYT domain-containing protein.
    
 0.829
A0A5C5FVA1
Vaculolar membrane protein-domain-containing protein.
    
 0.701
A0A5C5FZY0
Uncharacterized protein.
    
 0.701
A0A5C5FR05
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.658
A0A5C5FUB4
Mu homology domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
  0.658
A0A5C5FZG1
AAA domain-containing protein.
    
  0.647
A0A5C5FLE0
Uncharacterized protein.
    
 0.645
A0A5C5FLF5
Metallo-dependent phosphatase-like protein; Belongs to the MRE11/RAD32 family.
    
 0.645
A0A5C5FMH0
Proteophosphoglycan 5.
    
 0.645
A0A5C5FX70
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.625
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.