STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5FWL5Extradiol aromatic ring-opening dioxygenase. (336 aa)    
Predicted Functional Partners:
A0A5C5G4U7
Nitrate reductase.
    
  0.768
A0A5C5FK96
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.552
A0A5C5FQQ1
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.552
A0A5C5FWK4
Putative protease IV sppA.
    
 0.552
A0A5C5FQU0
Flavo protein.
     
 0.543
A0A5C5FW49
Cytochrome b5-like heme/steroid binding domain-containing protein; Belongs to the cytochrome b5 family.
    
  0.460
A0A5C5FQ56
FMN-dependent dehydrogenase-domain-containing protein.
  
  0.421
A0A5C5FYZ6
L-mandelate dehydrogenase.
  
  0.421
A0A5C5G6R0
Putative L-lactate dehydrogenase.
  
  0.421
A0A5C5G8K2
Cytochrome b2.
  
  0.421
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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