STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5FZP6Pyridoxal phosphate-dependent transferase. (554 aa)    
Predicted Functional Partners:
A0A5C5FWV1
Tryptophan synthase.
    
 0.864
A0A5C5G4U7
Nitrate reductase.
   
 
 0.734
A0A5C5FW49
Cytochrome b5-like heme/steroid binding domain-containing protein; Belongs to the cytochrome b5 family.
   
 
  0.732
A0A5C5G2Y0
Putative 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.709
A0A5C5G040
Fungal-specific transcription factor domain-containing protein.
  
 0.702
A0A5C5G005
Synaptobrevin.
    
 0.658
A0A5C5FWC9
FAD binding domain-containing protein.
    
 0.643
A0A5C5G5K6
Proteophosphoglycan ppg4.
   
 0.635
A0A5C5G803
ATP-NAD kinase-like domain-containing protein.
   
 0.635
A0A5C5FKF5
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
    
 0.632
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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