STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5G1G6Armadillo-type protein. (338 aa)    
Predicted Functional Partners:
A0A5C5FPX6
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.991
A0A5C5FXB2
Ribosomal protein L23/L15e core domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
  
 0.991
A0A5C5G2N6
Ribosomal_L18_c domain-containing protein.
  
 0.991
A0A5C5G6H7
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.990
A0A5C5GA50
Translation protein SH3-like domain-containing protein.
  
 0.986
A0A5C5FKV8
Putative ribosomal protein L35.
  
 0.983
A0A5C5FWJ8
Protein transporter SEC61 subunit alpha, variant; Belongs to the SecY/SEC61-alpha family.
  
 
 0.982
A0A5C5FMW8
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 0.981
A0A5C5FR93
Ribosomal protein L21e-domain-containing protein.
  
 0.981
A0A5C5FU36
RNA recognition motif-type RNA-binding protein; Belongs to the bacterial ribosomal protein bL17 family.
  
 0.981
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.