STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5G1U5HIT-like protein. (142 aa)    
Predicted Functional Partners:
A0A5C5G0V3
Uncharacterized protein.
    
 0.820
A0A5C5G4U7
Nitrate reductase.
  
  0.820
A0A5C5G5T6
Kinase-like domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.759
A0A5C5FRT5
RNA polymerase I-specific transcription initiation factor RRN3-domain-containing protein; Belongs to the pirin family.
    
 0.756
A0A5C5FXU2
CDK-activating kinase assembly factor MAT1-domain-containing protein.
    
 0.747
A0A5C5FTM4
SprT-like family-domain-containing protein.
    
 0.742
A0A5C5G0R9
CMGC/CDK protein kinase.
    
 0.706
A0A5C5FYT8
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.688
A0A5C5FPK5
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.680
A0A5C5FT85
Cyclin-like protein; Belongs to the cyclin family.
   
  0.672
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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