STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A5C5G6L5Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (2300 aa)    
Predicted Functional Partners:
A0A5C5FJS7
Sec23/Sec24 trunk domain-containing protein.
   
 0.998
A0A5C5FYF9
Protein transporter SEC13; Belongs to the WD repeat SEC13 family.
    
 0.995
A0A5C5FM15
Uncharacterized protein.
   
 0.986
A0A5C5G0W8
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.986
A0A5C5G5E2
Uncharacterized protein.
   
 0.947
A0A5C5G8W7
ADP-ribosylation factor family-domain-containing protein; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.923
A0A5C5G3Q5
Other/AUR protein kinase; Belongs to the protein kinase superfamily.
    
 
 0.915
A0A5C5FUD4
Uncharacterized protein.
    
 0.844
A0A5C5G3G3
Longin-like domain-containing protein; Belongs to the synaptobrevin family.
   
 
 0.843
A0A5C5FZ35
RNA pol II accessory factor, Cdc73 family-domain-containing protein.
    
 0.840
Your Current Organism:
Rhodotorula diobovata
NCBI taxonomy Id: 5288
Other names: ATCC 22265, CBS 6085, CCRC 22473, CCRC:22473, IGC 4364, JCM 3787, MUCL 30314, NCYC 2642, NRRL Y-7196, R. diobovata, Rhodosporidium diobovatum, Rhodotorula diobovata (S.Y. Newell & I.L. Hunter) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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