SMAX5B_002123 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_002123

Putative coagulation factor VII. (429 aa)

Predicted Functional Partners:

SMAX5B_002120

0.880

SMAX5B_001039

0.867

SMAX5B_001316

0.866

SMAX5B_022102

0.797

SMAX5B_014380

0.797

SMAX5B_002292

0.797

ENSSMAP00000004938

0.773

SMAX5B_000355

0.767

SMAX5B_010269

0.739

SMAX5B_009357

0.739

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000004938	SMAX5B_001039	ENSSMAP00000004938	ENSSMAP00000024622	annotation not available	Putative antithrombin-III; Belongs to the serpin family.	0.559
ENSSMAP00000004938	SMAX5B_001316	ENSSMAP00000004938	ENSSMAP00000031272	annotation not available	Putative tissue factor-like.	0.782
ENSSMAP00000004938	SMAX5B_002120	ENSSMAP00000004938	ENSSMAP00000000080	annotation not available	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.848
ENSSMAP00000004938	SMAX5B_002123	ENSSMAP00000004938	ENSSMAP00000000056	annotation not available	Putative coagulation factor VII.	0.773
SMAX5B_000355	SMAX5B_001039	ENSSMAP00000004540	ENSSMAP00000024622	Protein Z-dependent protease inhibitor isoform 3; Belongs to the serpin family.	Putative antithrombin-III; Belongs to the serpin family.	0.735
SMAX5B_000355	SMAX5B_002120	ENSSMAP00000004540	ENSSMAP00000000080	Protein Z-dependent protease inhibitor isoform 3; Belongs to the serpin family.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.942
SMAX5B_000355	SMAX5B_002123	ENSSMAP00000004540	ENSSMAP00000000056	Protein Z-dependent protease inhibitor isoform 3; Belongs to the serpin family.	Putative coagulation factor VII.	0.767
SMAX5B_000355	SMAX5B_009357	ENSSMAP00000004540	ENSSMAP00000029922	Protein Z-dependent protease inhibitor isoform 3; Belongs to the serpin family.	Putative coagulation factor VIII-like; Belongs to the multicopper oxidase family.	0.545
SMAX5B_000355	SMAX5B_010269	ENSSMAP00000004540	ENSSMAP00000018173	Protein Z-dependent protease inhibitor isoform 3; Belongs to the serpin family.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.569
SMAX5B_001039	ENSSMAP00000004938	ENSSMAP00000024622	ENSSMAP00000004938	Putative antithrombin-III; Belongs to the serpin family.	annotation not available	0.559
SMAX5B_001039	SMAX5B_000355	ENSSMAP00000024622	ENSSMAP00000004540	Putative antithrombin-III; Belongs to the serpin family.	Protein Z-dependent protease inhibitor isoform 3; Belongs to the serpin family.	0.735
SMAX5B_001039	SMAX5B_001316	ENSSMAP00000024622	ENSSMAP00000031272	Putative antithrombin-III; Belongs to the serpin family.	Putative tissue factor-like.	0.546
SMAX5B_001039	SMAX5B_002120	ENSSMAP00000024622	ENSSMAP00000000080	Putative antithrombin-III; Belongs to the serpin family.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.999
SMAX5B_001039	SMAX5B_002123	ENSSMAP00000024622	ENSSMAP00000000056	Putative antithrombin-III; Belongs to the serpin family.	Putative coagulation factor VII.	0.867
SMAX5B_001039	SMAX5B_009357	ENSSMAP00000024622	ENSSMAP00000029922	Putative antithrombin-III; Belongs to the serpin family.	Putative coagulation factor VIII-like; Belongs to the multicopper oxidase family.	0.739
SMAX5B_001039	SMAX5B_010269	ENSSMAP00000024622	ENSSMAP00000018173	Putative antithrombin-III; Belongs to the serpin family.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.739
SMAX5B_001316	ENSSMAP00000004938	ENSSMAP00000031272	ENSSMAP00000004938	Putative tissue factor-like.	annotation not available	0.782
SMAX5B_001316	SMAX5B_001039	ENSSMAP00000031272	ENSSMAP00000024622	Putative tissue factor-like.	Putative antithrombin-III; Belongs to the serpin family.	0.546
SMAX5B_001316	SMAX5B_002120	ENSSMAP00000031272	ENSSMAP00000000080	Putative tissue factor-like.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.850
SMAX5B_001316	SMAX5B_002123	ENSSMAP00000031272	ENSSMAP00000000056	Putative tissue factor-like.	Putative coagulation factor VII.	0.866