STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_018836Putative transcription factor SOX-6. (767 aa)    
Predicted Functional Partners:
SMAX5B_011937
Catenin beta-1.
   
 0.797
SMAX5B_001641
Putative junction plakoglobin-like.
   
 0.721
SMAX5B_015859
Catenin beta-1.
   
 0.721
SMAX5B_001376
Putative junction plakoglobin-like.
   
 0.721
SMAX5B_005505
Putative transcription factor SOX-5.
  
 
 
0.702
SMAX5B_010186
Putative E3 ubiquitin-protein ligase TRIP12-like isoform 2.
    
 
 0.677
ENSSMAP00000005882
SRY-box transcription factor 4b.
    
0.565
SMAX5B_000315
Transcription factor SOX.
    
0.565
SMAX5B_016250
Transcription factor SOX.
    
0.565
SMAX5B_006286
Transcription factor Sox10b.
    
0.516
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.