STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_012671E3 ubiquitin-protein ligase. (1252 aa)    
Predicted Functional Partners:
ENSSMAP00000008002
Ribosomal protein S27a.
    
 0.931
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.890
ENSSMAP00000034351
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.882
SMAX5B_022130
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
    
 0.877
ENSSMAP00000000415
annotation not available
    
 0.876
ENSSMAP00000014581
annotation not available
    
 0.876
SMAX5B_010996
Arrestin domain containing 3.
    
 
 0.872
SMAX5B_019272
Putative E3 ubiquitin-protein ligase Mdm2; Belongs to the MDM2/MDM4 family.
    
 0.863
SMAX5B_009336
Putative disks large-like 3-like; Belongs to the MAGUK family.
    
  0.862
ENSSMAP00000002606
Si:ch211-195b13.1.
    
 0.860
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.