Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SMAX5B_019939Putative nuclear pore complex protein Nup88. (470 aa)    
Predicted Functional Partners:
SMAX5B_013890
Putative nuclear pore complex protein Nup214.
   
 0.999
SMAX5B_015646
Putative nuclear pore complex protein Nup153.
   
 0.999
SMAX5B_020668-2
Putative centrosomal protein of 192 kDa.
   
 0.999
SMAX5B_018885
Putative nuclear pore complex protein Nup98-Nup96.
   
 0.999
SMAX5B_003547
Putative nuclear pore complex protein Nup155.
   
 0.998
SMAX5B_000224
Putative nucleoporin Nup43-like.
   
 0.998
SMAX5B_016381
Putative aladin.
   
 0.998
SMAX5B_013900
Putative nucleoporin NUP188-like.
   
 0.998
SMAX5B_017847
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.998
SMAX5B_020988
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.998
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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