SMAX5B_003622 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_003622

Putative zinc-binding protein A33-like. (549 aa)

Predicted Functional Partners:

ENSSMAP00000008002

0.506

DDX41

0.499

SMAX5B_016471

0.491

SMAX5B_018371

0.466

SMAX5B_007767

0.462

SMAX5B_009815

0.462

SMAX5B_018603

0.438

SMAX5B_003528

0.436

SMAX5B_003783

0.433

SMAX5B_020940

0.432

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	ENSSMAP00000008002	ENSSMAP00000011705	ENSSMAP00000008002	DEAD-box helicase 41.	Ribosomal protein S27a.	0.558
DDX41	SMAX5B_003528	ENSSMAP00000011705	ENSSMAP00000007769	DEAD-box helicase 41.	Putative E3 ubiquitin-protein ligase TRIM32.	0.628
DDX41	SMAX5B_003622	ENSSMAP00000011705	ENSSMAP00000001295	DEAD-box helicase 41.	Putative zinc-binding protein A33-like.	0.499
DDX41	SMAX5B_018603	ENSSMAP00000011705	ENSSMAP00000020234	DEAD-box helicase 41.	Melanoma differentiation-associated protein 5 isoform 2.	0.431
ENSSMAP00000008002	DDX41	ENSSMAP00000008002	ENSSMAP00000011705	Ribosomal protein S27a.	DEAD-box helicase 41.	0.558
ENSSMAP00000008002	SMAX5B_003528	ENSSMAP00000008002	ENSSMAP00000007769	Ribosomal protein S27a.	Putative E3 ubiquitin-protein ligase TRIM32.	0.635
ENSSMAP00000008002	SMAX5B_003622	ENSSMAP00000008002	ENSSMAP00000001295	Ribosomal protein S27a.	Putative zinc-binding protein A33-like.	0.506
ENSSMAP00000008002	SMAX5B_007767	ENSSMAP00000008002	ENSSMAP00000000412	Ribosomal protein S27a.	Putative ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family.	0.964
ENSSMAP00000008002	SMAX5B_009815	ENSSMAP00000008002	ENSSMAP00000011479	Ribosomal protein S27a.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.964
ENSSMAP00000008002	SMAX5B_018603	ENSSMAP00000008002	ENSSMAP00000020234	Ribosomal protein S27a.	Melanoma differentiation-associated protein 5 isoform 2.	0.934
SMAX5B_003528	DDX41	ENSSMAP00000007769	ENSSMAP00000011705	Putative E3 ubiquitin-protein ligase TRIM32.	DEAD-box helicase 41.	0.628
SMAX5B_003528	ENSSMAP00000008002	ENSSMAP00000007769	ENSSMAP00000008002	Putative E3 ubiquitin-protein ligase TRIM32.	Ribosomal protein S27a.	0.635
SMAX5B_003528	SMAX5B_003622	ENSSMAP00000007769	ENSSMAP00000001295	Putative E3 ubiquitin-protein ligase TRIM32.	Putative zinc-binding protein A33-like.	0.436
SMAX5B_003528	SMAX5B_007767	ENSSMAP00000007769	ENSSMAP00000000412	Putative E3 ubiquitin-protein ligase TRIM32.	Putative ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family.	0.916
SMAX5B_003528	SMAX5B_009815	ENSSMAP00000007769	ENSSMAP00000011479	Putative E3 ubiquitin-protein ligase TRIM32.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.916
SMAX5B_003622	DDX41	ENSSMAP00000001295	ENSSMAP00000011705	Putative zinc-binding protein A33-like.	DEAD-box helicase 41.	0.499
SMAX5B_003622	ENSSMAP00000008002	ENSSMAP00000001295	ENSSMAP00000008002	Putative zinc-binding protein A33-like.	Ribosomal protein S27a.	0.506
SMAX5B_003622	SMAX5B_003528	ENSSMAP00000001295	ENSSMAP00000007769	Putative zinc-binding protein A33-like.	Putative E3 ubiquitin-protein ligase TRIM32.	0.436
SMAX5B_003622	SMAX5B_003783	ENSSMAP00000001295	ENSSMAP00000010853	Putative zinc-binding protein A33-like.	Alpha-mannosidase.	0.433
SMAX5B_003622	SMAX5B_007767	ENSSMAP00000001295	ENSSMAP00000000412	Putative zinc-binding protein A33-like.	Putative ubiquitin-conjugating enzyme E2 N-like; Belongs to the ubiquitin-conjugating enzyme family.	0.462