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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBQLN1Ubiquilin 1. (556 aa)    
Predicted Functional Partners:
SMAX5B_017597
Putative histone H2A deubiquitinase MYSM1.
   
 0.993
SMAX5B_012637
Putative intersectin-2.
    
  0.986
SMAX5B_008282
Putative intersectin-2.
    
  0.986
SMAX5B_015038
Putative ubiquitin-conjugating enzyme E2 variant 1-like isoform 2.
   
 0.948
SMAX5B_020525
Putative next to BRCA1 1 protein.
   
 0.945
SMAX5B_004399
Putative next to BRCA1 1 protein.
   
 0.945
SMAX5B_000686
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.918
SMAX5B_003812
26S proteasome non-ATPase regulatory subunit 13 isoform 2.
   
 0.917
SMAX5B_006657
Putative E3 ubiquitin-protein ligase TRAF7.
    
 0.916
SMAX5B_010186
Putative E3 ubiquitin-protein ligase TRIP12-like isoform 2.
   
 0.914
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.