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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_016515Putative FERM domain-containing protein 3-like. (636 aa)    
Predicted Functional Partners:
ENSSMAP00000022107
annotation not available
 
      0.844
SMAX5B_002418
Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.
   
 0.734
CASK
Peripheral plasma membrane protein CASK.
   
 0.734
PTPN20
Putative tyrosine-protein phosphatase non-receptor type 13.
 
      0.607
SMAX5B_002979
Spectrin alpha chain non-erythrocytic 1.
   
 0.474
ENSSMAP00000008161
Erythrocyte membrane protein band 4.1 like 5.
     
0.461
SMAX5B_011859
Putative band 4.1-like protein 4B.
     
0.461
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
    
 
 0.423
SMAX5B_004842
Putative spectrin beta chain non-erythrocytic 4-like.
   
 0.421
ENSSMAP00000004716
annotation not available
   
 0.421
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.