Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_016089Putative non--likeous end-joining factor 1-like. (346 aa)    
Predicted Functional Partners:
SMAX5B_022695
DNA ligase.
    
 0.964
SMAX5B_018729
DUF4610 domain containing protein isoform 3.
    
 0.918
SMAX5B_018474
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.890
SMAX5B_020350
Putative X-ray repair cross-complementing protein 6.
    
 0.861
ENSSMAP00000014987
annotation not available
    
 0.814
SMAX5B_001712
Putative DNA polymerase lambda; Belongs to the DNA polymerase type-X family.
     
 0.772
SMAX5B_010457
Putative DNA mismatch repair protein Msh3; Component of the post-replicative DNA mismatch repair system (MMR).
   
  
 0.660
SMAX5B_009938
Putative endonuclease 8-like 1 isoform 5.
      
 0.656
SMAX5B_008231
Putative glycerophosphocholine phosphodiesterase GPCPD1.
    
 
 0.651
SMAX5B_001553
Putative DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.634
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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