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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_002504Ankyrin repeat domain-containing protein 13D. (629 aa)    
Predicted Functional Partners:
ENSSMAP00000034351
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.866
ENSSMAP00000014631
annotation not available
    
   0.822
ENSSMAP00000011103
annotation not available
    
   0.600
SMAX5B_021166
Putative leucine-rich repeat-containing protein 73.
      
 0.591
SMAX5B_020362
Putative AP-4 complex accessory subunit tepsin.
      
 0.574
VSIG10
Putative WD repeat and SOCS box-containing protein 2.
      
 0.530
SMAX5B_002253
Putative nitrogen permease regulator 2-like protein-like isoform 4.
      
 0.528
SMAX5B_005806
Putative DNA-directed RNA polymerase III subunit RPC8.
      
 0.521
SMAX5B_003524
Uncharacterized protein.
 
   
  0.501
SMAX5B_000673
Uncharacterized protein.
 
   
  0.499
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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