STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_008063Putative RNA-binding protein Raly. (296 aa)    
Predicted Functional Partners:
SMAX5B_022369
Putative heterogeneous nuclear ribonucleoprotein M-like.
   
 0.852
ENSSMAP00000023988
RNA binding motif protein X-linked.
   
 0.816
ENSSMAP00000022261
annotation not available
  
0.802
SMAX5B_006600
Putative heterogeneous nuclear ribonucleoprotein C-like.
  
0.801
SMAX5B_008251
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.789
SMAX5B_013814
Putative heterogeneous nuclear ribonucleoprotein K-like.
   
 0.733
SMAX5B_016556
Putative heterogeneous nuclear ribonucleoprotein K-like.
   
 0.733
SMAX5B_011302
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
 0.717
SMAX5B_005730
Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family.
   
 0.716
SMAX5B_010234
Splicing factor 3B subunit 1.
   
 0.715
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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