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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_011327Uncharacterized protein. (255 aa)    
Predicted Functional Partners:
SMAX5B_018533
Putative pre-mRNA-splicing factor CWC22-like.
   
   0.988
SMAX5B_013355
Putative pre-mRNA-processing-splicing factor 8.
    
 
 0.876
SMAX5B_008857
Uncharacterized protein.
    
   0.853
SMAX5B_019672
Putative pre-mRNA-processing factor 17.
    
   0.841
SMAX5B_011220
116 kDa U5 small nuclear ribonucleoprotein component.
    
   0.820
SMAX5B_010605
Small nuclear ribonucleoprotein F.
    
 
 0.816
ENSSMAP00000014281
Small nuclear ribonucleoprotein D1 polypeptide.
    
 
 0.813
SMAX5B_003453
Pre-mRNA-splicing factor syf2.
   
   0.779
SMAX5B_002693
Pre-mRNA-splicing factor SPF27.
   
 
 0.774
SMAX5B_018618
Putative corepressor interacting with RBPJ 1 isoform 2.
   
 
 0.771
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.