STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM15Putative PR domain zinc finger protein 15. (1157 aa)    
Predicted Functional Partners:
SMAX5B_019619
Putative adenylate kinase 9 isoform 2.
    
  0.873
SMAX5B_021952
Putative codanin-1.
   
    0.787
SMAX5B_004819
Putative receptor-interacting serine/threonine-protein kinase 4.
    
 0.751
SMAX5B_016882
Putative 28S ribosomal protein S6 mitochondrial.
    
 0.708
SMAX5B_007298
Uncharacterized protein.
   
  0.680
SMAX5B_018326
Putative BRCA1-associated RING domain protein 1 isoform 2.
    
 0.636
SMAX5B_006832
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
     
 0.625
SMAX5B_020815
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
    
 0.620
SMAX5B_013556
Ragulator complex protein LAMTOR2.
    
 0.610
YTHDC2
Putative ATP-dependent RNA helicase YTHDC2.
   
  0.597
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.