SMAX5B_006519 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_006519

Phosphoribosyl pyrophosphate synthase-associated protein 2. (412 aa)

Predicted Functional Partners:

SMAX5B_002315

0.929

SMAX5B_002806

0.902

SMAX5B_005027

0.902

SMAX5B_019034

0.896

SMAX5B_022041

0.896

SMAX5B_018407

0.867

SMAX5B_009120

0.862

RBKS

0.860

SMAX5B_018415

0.842

SMAX5B_013122

0.838

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RBKS	SMAX5B_002315	ENSSMAP00000024756	ENSSMAP00000026985	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Putative GDH/6PGL endoplasmic bifunctional protein.	0.848
RBKS	SMAX5B_002806	ENSSMAP00000024756	ENSSMAP00000005670	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.574
RBKS	SMAX5B_005027	ENSSMAP00000024756	ENSSMAP00000013671	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Putative 2-oxoisovalerate dehydrogenase subunit beta mitochondrial.	0.566
RBKS	SMAX5B_006519	ENSSMAP00000024756	ENSSMAP00000002056	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Phosphoribosyl pyrophosphate synthase-associated protein 2.	0.860
RBKS	SMAX5B_009120	ENSSMAP00000024756	ENSSMAP00000011457	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Putative ribose-5-phosphate isomerase.	0.923
RBKS	SMAX5B_018407	ENSSMAP00000024756	ENSSMAP00000008684	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Putative uridine 5'-monophosphate synthase.	0.672
RBKS	SMAX5B_019034	ENSSMAP00000024756	ENSSMAP00000010014	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Ribose-phosphate pyrophosphokinase 1.	0.932
RBKS	SMAX5B_022041	ENSSMAP00000024756	ENSSMAP00000023153	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Ribose-phosphate pyrophosphokinase 2.	0.932
SMAX5B_002315	RBKS	ENSSMAP00000026985	ENSSMAP00000024756	Putative GDH/6PGL endoplasmic bifunctional protein.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.848
SMAX5B_002315	SMAX5B_002806	ENSSMAP00000026985	ENSSMAP00000005670	Putative GDH/6PGL endoplasmic bifunctional protein.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.937
SMAX5B_002315	SMAX5B_005027	ENSSMAP00000026985	ENSSMAP00000013671	Putative GDH/6PGL endoplasmic bifunctional protein.	Putative 2-oxoisovalerate dehydrogenase subunit beta mitochondrial.	0.939
SMAX5B_002315	SMAX5B_006519	ENSSMAP00000026985	ENSSMAP00000002056	Putative GDH/6PGL endoplasmic bifunctional protein.	Phosphoribosyl pyrophosphate synthase-associated protein 2.	0.929
SMAX5B_002315	SMAX5B_009120	ENSSMAP00000026985	ENSSMAP00000011457	Putative GDH/6PGL endoplasmic bifunctional protein.	Putative ribose-5-phosphate isomerase.	0.744
SMAX5B_002315	SMAX5B_013122	ENSSMAP00000026985	ENSSMAP00000018395	Putative GDH/6PGL endoplasmic bifunctional protein.	Bifunctional glutamate/proline--tRNA ligase.	0.556
SMAX5B_002315	SMAX5B_018407	ENSSMAP00000026985	ENSSMAP00000008684	Putative GDH/6PGL endoplasmic bifunctional protein.	Putative uridine 5'-monophosphate synthase.	0.674
SMAX5B_002315	SMAX5B_019034	ENSSMAP00000026985	ENSSMAP00000010014	Putative GDH/6PGL endoplasmic bifunctional protein.	Ribose-phosphate pyrophosphokinase 1.	0.947
SMAX5B_002315	SMAX5B_022041	ENSSMAP00000026985	ENSSMAP00000023153	Putative GDH/6PGL endoplasmic bifunctional protein.	Ribose-phosphate pyrophosphokinase 2.	0.947
SMAX5B_002806	RBKS	ENSSMAP00000005670	ENSSMAP00000024756	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.574
SMAX5B_002806	SMAX5B_002315	ENSSMAP00000005670	ENSSMAP00000026985	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Putative GDH/6PGL endoplasmic bifunctional protein.	0.937
SMAX5B_002806	SMAX5B_005027	ENSSMAP00000005670	ENSSMAP00000013671	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Putative 2-oxoisovalerate dehydrogenase subunit beta mitochondrial.	0.701