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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_006687Putative von Willebrand factor A domain-containing protein 5B2. (1081 aa)    
Predicted Functional Partners:
ENSSMAP00000001909
Poly (ADP-ribose) glycohydrolase a.
    
 0.847
SMAX5B_017274
Putative poly(ADP-ribose) glycohydrolase-like.
    
 0.847
SMAX5B_002752
Putative DNA repair protein complementing XP-C cells.
    
 0.772
SMAX5B_007547
Putative UPF0609 protein C4orf27-like.
    
 
 0.739
SMAX5B_018474
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
   
 
 0.734
SMAX5B_006294
Putative flap endonuclease 1-like.
   
 0.723
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.723
SMAX5B_020350
Putative X-ray repair cross-complementing protein 6.
   
 
 0.707
SMAX5B_003989
H2AFY MGC137823 isoform 3; Belongs to the histone H2A family.
    
 
 0.705
SMAX5B_008496
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 
 0.705
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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