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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_007676Putative protocadherin alpha-3-like. (210 aa)    
Predicted Functional Partners:
SMAX5B_007670
Cadherin 2 multi-domain protein.
 
     0.910
SMAX5B_008850
Putative protocadherin alpha-C2-like.
 
     0.909
ENSSMAP00000030576
annotation not available
 
    
0.876
ENSSMAP00000026361
annotation not available
 
    
0.825
ENSSMAP00000026420
annotation not available
 
    
0.743
ENSSMAP00000002538
annotation not available
 
     0.724
SMAX5B_009843
Putative four-jointed box protein 1.
   
 0.637
SMAX5B_011315
Putative protocadherin Fat 1-like.
   
 
0.612
SMAX5B_016565
Putative protocadherin Fat 2.
   
 
0.612
SMAX5B_007904
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
  0.506
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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