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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000002558RAD23 homolog A, nucleotide excision repair protein a. (364 aa)    
Predicted Functional Partners:
SMAX5B_017597
Putative histone H2A deubiquitinase MYSM1.
   
 0.994
SMAX5B_002752
Putative DNA repair protein complementing XP-C cells.
   
 0.970
SMAX5B_011098
Putative peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.
    
 0.968
SMAX5B_015038
Putative ubiquitin-conjugating enzyme E2 variant 1-like isoform 2.
   
 0.951
SMAX5B_010188
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
   
 0.945
ENSSMAP00000006984
Proteasome 26S subunit, ATPase 1a.
   
 0.941
SMAX5B_012701
26S proteasome non-ATPase regulatory subunit 14.
   
 0.934
ENSSMAP00000000415
annotation not available
    
0.933
ENSSMAP00000014581
annotation not available
    
 0.933
SMAX5B_020525
Putative next to BRCA1 1 protein.
   
 0.929
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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