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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_003936Putative R3H domain-containing protein 1-like. (1106 aa)    
Predicted Functional Partners:
SRL
Putative sarcalumenin-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 
  0.499
SMAX5B_021062
Srl protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 
  0.499
SMAX5B_009873
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.496
SMAX5B_019147
Putative DNA-directed RNA polymerases I and III subunit RPAC2-like.
    
 
 0.449
SMAX5B_000861
Putative mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.
   
 
 0.438
SMAX5B_014109
Cytochrome b-c1 complex subunit 1 mitochondrial.
   
 
 0.438
SMAX5B_014811
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
      
 0.436
SMAX5B_020052
Putative rap guanine nucleotide exchange factor-like 1; Belongs to the NDK family.
    
 
 0.415
SMAX5B_020369
Cytochrome b-c1 complex subunit 2 mitochondrial; Belongs to the peptidase M16 family.
    
 
 0.406
SMAX5B_020765
Putative cytochrome b-c1 complex subunit 2 mitochondrial-like.
    
 
 0.406
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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