SMAX5B_007328 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_007328

Putative glycerophosphodiester phosphodiesterase 1-like. (334 aa)

Predicted Functional Partners:

SMAX5B_008501

0.879

SMAX5B_022419

0.851

SMAX5B_006949

0.830

SMAX5B_000316

0.830

SMAX5B_008959

0.761

ENSSMAP00000026550

0.715

SMAX5B_016089

0.705

SMAX5B_002405

0.705

ENSSMAP00000024415

0.687

SMAX5B_002685

0.680

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000024415	SMAX5B_000316	ENSSMAP00000024415	ENSSMAP00000033505	annotation not available	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	0.839
ENSSMAP00000024415	SMAX5B_007328	ENSSMAP00000024415	ENSSMAP00000003003	annotation not available	Putative glycerophosphodiester phosphodiesterase 1-like.	0.687
ENSSMAP00000024415	SMAX5B_008501	ENSSMAP00000024415	ENSSMAP00000003266	annotation not available	Putative cardiolipin synthase-like.	0.899
ENSSMAP00000026550	SMAX5B_000316	ENSSMAP00000026550	ENSSMAP00000033505	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase).	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	0.849
ENSSMAP00000026550	SMAX5B_007328	ENSSMAP00000026550	ENSSMAP00000003003	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase).	Putative glycerophosphodiester phosphodiesterase 1-like.	0.715
ENSSMAP00000026550	SMAX5B_008501	ENSSMAP00000026550	ENSSMAP00000003266	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase).	Putative cardiolipin synthase-like.	0.899
SMAX5B_000316	ENSSMAP00000024415	ENSSMAP00000033505	ENSSMAP00000024415	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	annotation not available	0.839
SMAX5B_000316	ENSSMAP00000026550	ENSSMAP00000033505	ENSSMAP00000026550	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase).	0.849
SMAX5B_000316	SMAX5B_006949	ENSSMAP00000033505	ENSSMAP00000019555	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	Putative glycerol-3-phosphate dehydrogenase mitochondrial.	0.873
SMAX5B_000316	SMAX5B_007328	ENSSMAP00000033505	ENSSMAP00000003003	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	Putative glycerophosphodiester phosphodiesterase 1-like.	0.830
SMAX5B_000316	SMAX5B_008501	ENSSMAP00000033505	ENSSMAP00000003266	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	Putative cardiolipin synthase-like.	0.887
SMAX5B_000316	SMAX5B_022419	ENSSMAP00000033505	ENSSMAP00000033985	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	Phospholipase A2.	0.865
SMAX5B_002405	SMAX5B_007328	ENSSMAP00000010421	ENSSMAP00000003003	Uncharacterized protein.	Putative glycerophosphodiester phosphodiesterase 1-like.	0.705
SMAX5B_002685	SMAX5B_007328	ENSSMAP00000017357	ENSSMAP00000003003	Putative monoglyceride lipase.	Putative glycerophosphodiester phosphodiesterase 1-like.	0.680
SMAX5B_002685	SMAX5B_008501	ENSSMAP00000017357	ENSSMAP00000003266	Putative monoglyceride lipase.	Putative cardiolipin synthase-like.	0.454
SMAX5B_006949	SMAX5B_000316	ENSSMAP00000019555	ENSSMAP00000033505	Putative glycerol-3-phosphate dehydrogenase mitochondrial.	Putative membrane-bound O-acyltransferase domain-containing protein 2-like; Belongs to the membrane-bound acyltransferase family.	0.873
SMAX5B_006949	SMAX5B_007328	ENSSMAP00000019555	ENSSMAP00000003003	Putative glycerol-3-phosphate dehydrogenase mitochondrial.	Putative glycerophosphodiester phosphodiesterase 1-like.	0.830
SMAX5B_006949	SMAX5B_008959	ENSSMAP00000019555	ENSSMAP00000018353	Putative glycerol-3-phosphate dehydrogenase mitochondrial.	Putative l-2-hydroxyglutarate dehydrogenase mitochondrial-like.	0.938
SMAX5B_007328	ENSSMAP00000024415	ENSSMAP00000003003	ENSSMAP00000024415	Putative glycerophosphodiester phosphodiesterase 1-like.	annotation not available	0.687
SMAX5B_007328	ENSSMAP00000026550	ENSSMAP00000003003	ENSSMAP00000026550	Putative glycerophosphodiester phosphodiesterase 1-like.	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase).	0.715