STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_011306Putative protocadherin-23. (3302 aa)    
Predicted Functional Partners:
SMAX5B_009843
Putative four-jointed box protein 1.
   
 0.781
SMAX5B_001641
Putative junction plakoglobin-like.
    
 0.713
SMAX5B_011937
Catenin beta-1.
    
 0.713
SMAX5B_015859
Catenin beta-1.
    
 0.713
SMAX5B_001376
Putative junction plakoglobin-like.
    
 0.713
SMAX5B_011315
Putative protocadherin Fat 1-like.
   
0.673
SMAX5B_016565
Putative protocadherin Fat 2.
   
0.673
SMAX5B_022071
Putative cadherin-related family member 5-like.
   
0.657
SMAX5B_020182
Putative protocadherin-15-like.
   
0.657
SMAX5B_017968
Putative protocadherin-15.
   
0.657
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.