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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TFAP4Putative transcription factor AP-4-like. (331 aa)    
Predicted Functional Partners:
SMAX5B_002387
Putative cyclin-dependent kinase inhibitor 1-like.
     
 0.633
CDKN1C
Putative cyclin-dependent kinase inhibitor 1C-like.
     
 0.633
SMAX5B_005507
Putative cyclin-dependent kinase inhibitor 1-like.
     
 0.633
ENSSMAP00000029694
annotation not available
     
 0.578
SMAX5B_005681
Putative cyclin-dependent kinase inhibitor 1B-like.
     
 0.539
SMAX5B_015633
Putative geminin isoform 4.
    
 
 0.474
SMAX5B_004985
Putative TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L.
      
 0.468
SMAX5B_006000
Putative nucleosome-remodeling factor subunit BPTF-like.
    
   0.461
SMAX5B_007455
Putative nucleosome-remodeling factor subunit BPTF isoform 2.
    
   0.461
ATXN7L3
Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.
    
 
 0.444
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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