STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000003742Lumican. (473 aa)    
Predicted Functional Partners:
SMAX5B_007769
Decorin; May affect the rate of fibrils formation.
  
  
0.957
SMAX5B_016516
SPARC isoform 2.
   
  
 0.946
SMAX5B_017664
Putative tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family.
    
 0.911
SMAX5B_005301
Transforming growth factor beta-2.
    
 0.870
SMAX5B_009339
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.870
SMAX5B_022663
Putative fibrillin-2-like.
   
 0.845
SMAX5B_022642
Putative multiple epidermal growth factor-like domains protein 6.
   
 0.845
ENSSMAP00000015848
Matrilin 4.
   
 0.845
MATN2
Matrilin 2.
   
 0.845
SMAX5B_015660
Putative cartilage matrix protein-like.
   
 0.845
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.