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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_008867E3 ubiquitin protein ligase. (1022 aa)    
Predicted Functional Partners:
SMAX5B_012522
Putative RNA polymerase-associated protein LEO1-like.
   
 0.994
SMAX5B_004313
Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.941
ENSSMAP00000020813
Ubiquitin-conjugating enzyme E2A (RAD6 homolog).
    
 0.941
SMAX5B_018306
Putative ubiquitin-conjugating enzyme E2 A isoform 3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.941
SMAX5B_006101
Parafibromin.
   
 0.917
SMAX5B_009190
RNA polymerase II-associated factor 1-like.
    
 0.908
SMAX5B_001762
Putative WW domain-containing adapter protein with coiled-coil-like.
   
 0.869
SMAX5B_005951
Putative WW domain-containing adapter protein with coiled-coil-like.
   
 0.869
SMAX5B_012306
Putative RNA polymerase-associated protein CTR9-like.
   
 0.854
SMAX5B_011741
Putative histone-lysine N-methyltransferase SETD2 isoform 2.
   
 
 0.831
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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