STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_000135Putative RNA-binding protein 25-like. (812 aa)    
Predicted Functional Partners:
ENSSMAP00000015213
annotation not available
   
 0.974
SMAX5B_020695
Putative luc7-like protein 3-like.
   
 0.974
SMAX5B_020210
Putative RNA-binding protein Luc7-like 1.
   
 0.966
SMAX5B_007545
Putative RNA-binding protein Luc7-like 2.
   
 0.966
SMAX5B_004205
Putative ATP-dependent RNA helicase DDX46-like.
   
 0.962
SART1
Putative U4/U6.U5 tri-snRNP-associated protein 1.
   
 
 0.956
SMAX5B_018555
Putative pre-mRNA-processing factor 40-like A-like.
   
 0.950
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
   
 
 0.949
SMAX5B_013018
Putative U1 small nuclear ribonucleoprotein 70 kDa.
   
 
 0.949
SMAX5B_003225
Putative U2 small nuclear ribonucleoprotein A' isoform 3.
   
 
 0.949
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.