STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_015266Putative UPF0568 protein C14orf166-like isoform 2. (242 aa)    
Predicted Functional Partners:
SMAX5B_008123
Putative ATP-dependent RNA helicase DDX1.
   
 0.989
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.975
SMAX5B_021972
Uncharacterized protein.
    
 0.971
SMAX5B_018497
Putative ashwin.
    
 0.944
SMAX5B_008633
C2H2-type domain-containing protein.
    
 
 0.943
SMAX5B_013494
Uncharacterized protein.
    
 
 0.868
ENSSMAP00000011849
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.692
SMAX5B_020570
Protein LSM12-like A isoform 2.
    
 
 0.661
ENSSMAP00000006462
DEAD (Asp-Glu-Ala-Asp) box helicase 5.
    
 0.620
DDX17
Putative RNA-dependent helicase p72 (DEAD-box protein p72) (DEAD-box protein 17); Belongs to the DEAD box helicase family.
    
 0.620
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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