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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_021793Putative tectonin beta-propeller repeat-containing protein 2. (221 aa)    
Predicted Functional Partners:
ENSSMAP00000029433
VPS41 subunit of HOPS complex.
    
   0.944
ENSSMAP00000004411
annotation not available
 
      0.898
SMAX5B_002124
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.883
SMAX5B_008226
Vacuolar protein sorting-associated protein 18.
    
 
 0.763
SMAX5B_010871
Putative ectopic P granules protein 5-like.
   
  
 0.667
SMAX5B_013756
Putative spatacsin.
   
  
 0.614
SMAX5B_018385
Putative N-acetylserotonin O-methyltransferase-like protein-like; Belongs to the G-protein coupled receptor 1 family.
      
 0.612
SMAX5B_011584
Putative 85/88 kDa calcium-independent phospholipase A2.
      
 0.609
HPS6
Putative Hermansky-Pudlak syndrome 6 protein.
    
 
 0.590
SMAX5B_011920
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.588
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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