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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM179Transmembrane protein 179. (230 aa)    
Predicted Functional Partners:
SMAX5B_017458
Protein BCCIP homolog; Belongs to the BCP1 family.
      
 0.497
SMAX5B_009112
Putative exonuclease 3'-5' domain-containing protein 2.
      
 0.463
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.456
SMAX5B_000458
Putative kinesin-like protein KIF26A-like; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.454
SMAX5B_000366
Signal recognition particle 14.
      
 0.453
SMAX5B_000288
Tetraspannin domain containing protein.
      
 0.450
SMAX5B_002853
Putative photoreceptor outer segment membrane glycoprotein 2-like.
      
 0.445
SMAX5B_008736
Uncharacterized protein.
      
 0.422
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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