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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_015637Sorting nexin-27. (563 aa)    
Predicted Functional Partners:
SMAX5B_012319
Putative vacuolar protein sorting-associated protein 26A-like.
   
 
 0.915
SMAX5B_004612
Uncharacterized protein.
    
 
 0.913
ENSSMAP00000010117
annotation not available
   
 
 0.770
SMAX5B_004552
Vacuolar protein sorting-associated protein 26b-like.
   
 
 0.770
SMAX5B_003242
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.685
SMAX5B_008973
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.596
SMAX5B_009663
Putative TBC1 domain family member 5.
    
 
 0.582
SMAX5B_009931
Putative early endosome antigen 1.
    
 
 0.570
ENSSMAP00000003999
annotation not available
    
 
 0.544
SMAX5B_005089
Putative sorting nexin-1-like.
   
 
 0.511
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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