SMAX5B_003626 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_003626

Putative ornithine decarboxylase antizyme 2-like. (205 aa)

Predicted Functional Partners:

SMAX5B_015981

0.971

ENSSMAP00000014317

0.952

SMAX5B_005050

0.952

ENSSMAP00000008104

0.754

ENSSMAP00000025902

0.730

SMAX5B_005736

0.701

SMAX5B_014298

0.671

SMAX5B_015676

0.668

SMAX5B_015619

0.665

ENSSMAP00000006984

0.660

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000006984	ENSSMAP00000008104	ENSSMAP00000006984	ENSSMAP00000008104	Proteasome 26S subunit, ATPase 1a.	Proteasome 20S subunit beta 6.	0.997
ENSSMAP00000006984	ENSSMAP00000014317	ENSSMAP00000006984	ENSSMAP00000014317	Proteasome 26S subunit, ATPase 1a.	Antizyme inhibitor 1b.	0.689
ENSSMAP00000006984	ENSSMAP00000025902	ENSSMAP00000006984	ENSSMAP00000025902	Proteasome 26S subunit, ATPase 1a.	Proteasome 20S subunit beta 4.	0.999
ENSSMAP00000006984	SMAX5B_003626	ENSSMAP00000006984	ENSSMAP00000004848	Proteasome 26S subunit, ATPase 1a.	Putative ornithine decarboxylase antizyme 2-like.	0.660
ENSSMAP00000006984	SMAX5B_005050	ENSSMAP00000006984	ENSSMAP00000016589	Proteasome 26S subunit, ATPase 1a.	Putative antizyme inhibitor 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.689
ENSSMAP00000006984	SMAX5B_005736	ENSSMAP00000006984	ENSSMAP00000033270	Proteasome 26S subunit, ATPase 1a.	Proteasome subunit alpha type.	0.999
ENSSMAP00000006984	SMAX5B_014298	ENSSMAP00000006984	ENSSMAP00000010735	Proteasome 26S subunit, ATPase 1a.	Proteasome subunit alpha type.	0.999
ENSSMAP00000006984	SMAX5B_015619	ENSSMAP00000006984	ENSSMAP00000027544	Proteasome 26S subunit, ATPase 1a.	Proteasome subunit beta.	0.996
ENSSMAP00000006984	SMAX5B_015676	ENSSMAP00000006984	ENSSMAP00000001513	Proteasome 26S subunit, ATPase 1a.	Proteasome subunit beta.	0.999
ENSSMAP00000006984	SMAX5B_015981	ENSSMAP00000006984	ENSSMAP00000024306	Proteasome 26S subunit, ATPase 1a.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.689
ENSSMAP00000008104	ENSSMAP00000006984	ENSSMAP00000008104	ENSSMAP00000006984	Proteasome 20S subunit beta 6.	Proteasome 26S subunit, ATPase 1a.	0.997
ENSSMAP00000008104	ENSSMAP00000025902	ENSSMAP00000008104	ENSSMAP00000025902	Proteasome 20S subunit beta 6.	Proteasome 20S subunit beta 4.	0.999
ENSSMAP00000008104	SMAX5B_003626	ENSSMAP00000008104	ENSSMAP00000004848	Proteasome 20S subunit beta 6.	Putative ornithine decarboxylase antizyme 2-like.	0.754
ENSSMAP00000008104	SMAX5B_005736	ENSSMAP00000008104	ENSSMAP00000033270	Proteasome 20S subunit beta 6.	Proteasome subunit alpha type.	0.999
ENSSMAP00000008104	SMAX5B_014298	ENSSMAP00000008104	ENSSMAP00000010735	Proteasome 20S subunit beta 6.	Proteasome subunit alpha type.	0.999
ENSSMAP00000008104	SMAX5B_015619	ENSSMAP00000008104	ENSSMAP00000027544	Proteasome 20S subunit beta 6.	Proteasome subunit beta.	0.939
ENSSMAP00000008104	SMAX5B_015676	ENSSMAP00000008104	ENSSMAP00000001513	Proteasome 20S subunit beta 6.	Proteasome subunit beta.	0.998
ENSSMAP00000014317	ENSSMAP00000006984	ENSSMAP00000014317	ENSSMAP00000006984	Antizyme inhibitor 1b.	Proteasome 26S subunit, ATPase 1a.	0.689
ENSSMAP00000014317	SMAX5B_003626	ENSSMAP00000014317	ENSSMAP00000004848	Antizyme inhibitor 1b.	Putative ornithine decarboxylase antizyme 2-like.	0.952
ENSSMAP00000014317	SMAX5B_005736	ENSSMAP00000014317	ENSSMAP00000033270	Antizyme inhibitor 1b.	Proteasome subunit alpha type.	0.621