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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPL560S ribosomal protein L5 isoform 2. (297 aa)    
Predicted Functional Partners:
SMAX5B_008251
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
SMAX5B_021258
Putative 60S ribosomal protein L35.
  
 0.998
SMAX5B_010429
Ribosomal protein L6-like.
  
 0.998
SMAX5B_011198
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
  
 0.998
SMAX5B_014336
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.998
SMAX5B_019220
60s ribosomal protein.
  
 0.998
SMAX5B_014920
Ribosomal protein L32 isoform 10.
  
 0.998
ENSSMAP00000016109
Ribosomal protein L23a.
  
 0.998
RPL9
Putative 60S ribosomal protein L9-like.
  
 0.998
SMAX5B_010113
60S ribosomal protein L4-B.
  
 0.998
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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