STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000004976Protein tyrosine phosphatase 4A3b. (173 aa)    
Predicted Functional Partners:
SMAX5B_005889
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.774
SMAX5B_001545
Putative metal transporter CNNM2-like.
    
 
 0.659
SMAX5B_013612
Putative metal transporter CNNM3 isoform 2.
    
 
 0.659
SMAX5B_013638
Putative metal transporter CNNM4.
    
 
 0.659
SMAX5B_000230
Putative metal transporter CNNM4-like.
    
 
 0.659
CNNM1
Putative metal transporter CNNM1.
    
 
 0.622
CNNM1-2
Putative metal transporter CNNM1-like.
    
 
 0.622
SMAX5B_011734
Casein kinase 2 alpha 1 isoform 2; Belongs to the protein kinase superfamily.
   
 
 0.562
SMAX5B_015039
Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.
   
 
 0.562
CSNK2A2
Putative casein kinase II subunit alpha'-like; Belongs to the protein kinase superfamily.
   
 
 0.562
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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